Descriptive statics SIV_farms
## Dataset dimensions: 25 rows x 178 columnsDescriptive statistics
Below you’ll find a per-variable summary and relevant plots for the
SIV_farms (df3) data set. Character variables are excluded
from this analysis.
Outcomes
IAV_positive
Summary statistics:
Variable: IAV_positive Class: logical FALSE 11 TRUE 14 Mode: TRUE Proportion of levels: FALSE 0.44, TRUE 0.56 NA count: 0
total_samples
Summary statistics:
Variable: total_samples Class: integer Min. 5.0 1st Qu. 5.0 Median 5.0 Mean 5.2 3rd Qu. 5.0 Max. 10.0 Variance: 1 Shapiro-Wilk p-value: 0.0000000001214 (not normal) NA count: 0
positive_pigs
Summary statistics:
Variable: positive_pigs Class: integer Min. 0.00 1st Qu. 0.00 Median 4.00 Mean 2.68 3rd Qu. 5.00 Max. 10.00 Variance: 7.727 Shapiro-Wilk p-value: 0.0001194 (not normal) NA count: 0
percent_positive_pigs
Summary statistics:
Variable: percent_positive_pigs Class: numeric Min. 0.0 1st Qu. 0.0 Median 80.0 Mean 49.6 3rd Qu. 100.0 Max. 100.0 Variance: 2271 Shapiro-Wilk p-value: 0.00001018 (not normal) NA count: 0
min_ct
Summary statistics:
Variable: min_ct Class: numeric Min. 19.97 1st Qu. 22.32 Median 27.08 Mean 26.92 3rd Qu. 30.96 Max. 35.29 NA's 11 Variance: 28.01 Shapiro-Wilk p-value: 0.2977 (normal) NA count: 11
max_ct
Summary statistics:
Variable: max_ct Class: numeric Min. 23.21 1st Qu. 32.36 Median 34.16 Mean 32.86 3rd Qu. 35.18 Max. 36.30 NA's 11 Variance: 14.57 Shapiro-Wilk p-value: 0.003606 (not normal) NA count: 11
mean_ct
Summary statistics:
Variable: mean_ct Class: numeric Min. 22.06 1st Qu. 29.00 Median 31.23 Mean 30.47 3rd Qu. 32.38 Max. 35.29 NA's 11 Variance: 13.58 Shapiro-Wilk p-value: 0.3713 (normal) NA count: 11
sd_ct
Summary statistics:
Variable: sd_ct Class: numeric Min. 0.4482 1st Qu. 0.9641 Median 1.9256 Mean 2.7241 3rd Qu. 5.3519 Max. 6.3873 NA's 12 Variance: 4.764 Shapiro-Wilk p-value: 0.0214 (not normal) NA count: 12
season_sampling
Summary statistics:
Variable: season_sampling Class: factor winter 9 spring 8 summer 3 autumn 5 Mode: winter Proportion of levels: winter 0.36, spring 0.32, summer 0.12, autumn 0.20 Levels: winter, spring, summer, autumn NA count: 0
canton_factor
Summary statistics:
Variable: canton_factor Class: factor North-West 1 Berne + Solothurn 9 East & Zurich 3 Romandy 3 Lucerne 9 Mode: Berne + Solothurn Proportion of levels: North-West 0.04, Berne + Solothurn 0.36, East & Zurich 0.12, Romandy 0.12, Lucerne 0.36 Levels: North-West, Berne + Solothurn, East & Zurich, Romandy, Lucerne NA count: 0
herdsize
Summary statistics:
Variable: herdsize Class: integer Min. 60.0 1st Qu. 233.0 Median 550.0 Mean 703.2 3rd Qu. 1000.0 Max. 2000.0 Variance: 311240 Shapiro-Wilk p-value: 0.008584 (not normal) NA count: 0
production_type_factor
Summary statistics:
Variable: production_type_factor Class: factor 1 16 2 3 3 2 4 4 5 0 Mode: 1 Proportion of levels: 1 0.64, 2 0.12, 3 0.08, 4 0.16, 5 0.00 Levels: 1, 2, 3, 4, 5 NA count: 0
Farrowing_on_farm
Summary statistics:
Variable: Farrowing_on_farm Class: logical FALSE 16 TRUE 9 Mode: FALSE Proportion of levels: FALSE 0.64, TRUE 0.36 NA count: 0
Isemination_on_farm
Summary statistics:
Variable: Isemination_on_farm Class: logical FALSE 20 TRUE 5 Mode: FALSE Proportion of levels: FALSE 0.80, TRUE 0.20 NA count: 0
Gestation_on_farm
Summary statistics:
Variable: Gestation_on_farm Class: logical FALSE 20 TRUE 5 Mode: FALSE Proportion of levels: FALSE 0.80, TRUE 0.20 NA count: 0
Weaners_on_farm
Summary statistics:
Variable: Weaners_on_farm Class: logical FALSE 15 TRUE 10 Mode: FALSE Proportion of levels: FALSE 0.60, TRUE 0.40 NA count: 0
Fattening_on_farm
Summary statistics:
Variable: Fattening_on_farm Class: logical FALSE 3 TRUE 22 Mode: TRUE Proportion of levels: FALSE 0.12, TRUE 0.88 NA count: 0
respiratory_signs
Summary statistics:
Variable: respiratory_signs Class: logical TRUE 25 Mode: TRUE Proportion of levels: TRUE 1.00 NA count: 0
rectal_temperature_max
Summary statistics:
Variable: rectal_temperature_max Class: numeric Min. 39.10 1st Qu. 40.25 Median 40.40 Mean 40.83 3rd Qu. 40.70 Max. 49.70 NA's 2 Variance: 4.301 Shapiro-Wilk p-value: 0.0000002099 (not normal) NA count: 2
rectal_temperature_avg
Summary statistics:
Variable: rectal_temperature_avg Class: numeric Min. 38.90 1st Qu. 39.85 Median 40.00 Mean 40.01 3rd Qu. 40.25 Max. 42.10 NA's 2 Variance: 0.4594 Shapiro-Wilk p-value: 0.02114 (not normal) NA count: 2
horses_closeby
Summary statistics:
Variable: horses_closeby Class: logical FALSE 23 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
dogs_closeby
Summary statistics:
Variable: dogs_closeby Class: logical FALSE 11 TRUE 14 Mode: TRUE Proportion of levels: FALSE 0.44, TRUE 0.56 NA count: 0
chicken_closeby
Summary statistics:
Variable: chicken_closeby Class: logical FALSE 13 TRUE 12 Mode: FALSE Proportion of levels: FALSE 0.52, TRUE 0.48 NA count: 0
turkey_closeby
Summary statistics:
Variable: turkey_closeby Class: logical FALSE 25 Mode: FALSE Proportion of levels: FALSE 1.00 NA count: 0
cattle_closeby
Summary statistics:
Variable: cattle_closeby Class: logical FALSE 12 TRUE 13 Mode: TRUE Proportion of levels: FALSE 0.48, TRUE 0.52 NA count: 0
cats_closeby
Summary statistics:
Variable: cats_closeby Class: logical FALSE 7 TRUE 18 Mode: TRUE Proportion of levels: FALSE 0.28, TRUE 0.72 NA count: 0
proximity_to_other_pig_herd
Summary statistics:
Variable: proximity_to_other_pig_herd Class: logical FALSE 7 TRUE 18 Mode: TRUE Proportion of levels: FALSE 0.28, TRUE 0.72 NA count: 0
proximity_to_other_poultry_herd
Summary statistics:
Variable: proximity_to_other_poultry_herd Class: logical FALSE 4 TRUE 21 Mode: TRUE Proportion of levels: FALSE 0.16, TRUE 0.84 NA count: 0
number_suckling_piglets
Summary statistics:
Variable: number_suckling_piglets Class: integer Min. 70.0 1st Qu. 170.0 Median 220.0 Mean 296.4 3rd Qu. 400.0 Max. 750.0 NA's 16 Variance: 43319 Shapiro-Wilk p-value: 0.1232 (normal) NA count: 16
number_weaners
Summary statistics:
Variable: number_weaners Class: integer Min. 70.0 1st Qu. 167.2 Median 350.0 Mean 329.3 3rd Qu. 427.5 Max. 600.0 NA's 15 Variance: 36578 Shapiro-Wilk p-value: 0.4032 (normal) NA count: 15
number_fattening_pigs
Summary statistics:
Variable: number_fattening_pigs Class: integer Min. 4.0 1st Qu. 135.0 Median 300.0 Mean 502.9 3rd Qu. 705.0 Max. 2000.0 NA's 3 Variance: 285982 Shapiro-Wilk p-value: 0.001568 (not normal) NA count: 3
number_young_sows
Summary statistics:
Variable: number_young_sows Class: integer Min. 2.0 1st Qu. 14.0 Median 21.5 Mean 26.0 3rd Qu. 33.5 Max. 59.0 NA's 21 Variance: 576.7 Shapiro-Wilk p-value: 0.6578 (normal) NA count: 21
number_old_sows
Summary statistics:
Variable: number_old_sows Class: integer Min. 12.00 1st Qu. 18.00 Median 40.00 Mean 49.22 3rd Qu. 60.00 Max. 125.00 NA's 16 Variance: 1406 Shapiro-Wilk p-value: 0.2317 (normal) NA count: 16
number_boars
Summary statistics:
Variable: number_boars Class: integer Min. 1.0 1st Qu. 1.0 Median 1.0 Mean 1.4 3rd Qu. 2.0 Max. 2.0 NA's 20 Variance: 0.3 Shapiro-Wilk p-value: 0.00647 (not normal) NA count: 20
number_of_origins
Summary statistics:
Variable: number_of_origins Class: integer Min. 1.00 1st Qu. 1.00 Median 2.00 Mean 3.25 3rd Qu. 4.25 Max. 12.00 NA's 1 Variance: 9.848 Shapiro-Wilk p-value: 0.00006538 (not normal) NA count: 1
quarantine_concept
Summary statistics:
Variable: quarantine_concept Class: logical FALSE 9 TRUE 16 Mode: TRUE Proportion of levels: FALSE 0.36, TRUE 0.64 NA count: 0
quarantine_in_herd_contact
Summary statistics:
Variable: quarantine_in_herd_contact Class: logical FALSE 18 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.72, TRUE 0.28 NA count: 0
herds_of_origin_respiratory_symptoms
Summary statistics:
Variable: herds_of_origin_respiratory_symptoms Class: logical FALSE 23 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
production_cycle
Summary statistics:
Variable: production_cycle Class: factor 1 5 2 2 3 6 other 12 Mode: other Proportion of levels: 1 0.20, 2 0.08, 3 0.24, other 0.48 Levels: 1, 2, 3, other NA count: 0
mode_stable_occupation_ai_centre
Summary statistics:
Variable: mode_stable_occupation_ai_centre Class: logical FALSE 3 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.60, TRUE 0.40 NA count: 20
mode_stable_occupation_gestation_stable
Summary statistics:
Variable: mode_stable_occupation_gestation_stable Class: logical FALSE 1 TRUE 4 Mode: TRUE Proportion of levels: FALSE 0.20, TRUE 0.80 NA count: 20
mode_stable_occupation_farrowing_stable
Summary statistics:
Variable: mode_stable_occupation_farrowing_stable Class: logical FALSE 3 TRUE 6 Mode: TRUE Proportion of levels: FALSE 0.33, TRUE 0.67 NA count: 16
cross_fostering_farrowing_stable
Summary statistics:
Variable: cross_fostering_farrowing_stable Class: factor 1 4 2 2 3 3 NA's 16 Mode: 1 Proportion of levels: 1 0.44, 2 0.22, 3 0.33 Levels: 1, 2, 3 NA count: 16
mode_stable_occupation_weaner_stable
Summary statistics:
Variable: mode_stable_occupation_weaner_stable Class: logical FALSE 6 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.60, TRUE 0.40 NA count: 15
mode_stable_occupation_fattening_stable
Summary statistics:
Variable: mode_stable_occupation_fattening_stable Class: logical FALSE 19 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.83, TRUE 0.17 NA count: 2
passing_through_other_age_group
Summary statistics:
Variable: passing_through_other_age_group Class: logical FALSE 16 TRUE 9 Mode: FALSE Proportion of levels: FALSE 0.64, TRUE 0.36 NA count: 0
outside_area
Summary statistics:
Variable: outside_area Class: logical FALSE 8 TRUE 17 Mode: TRUE Proportion of levels: FALSE 0.32, TRUE 0.68 NA count: 0
outside_area_ai_centre
Summary statistics:
Variable: outside_area_ai_centre Class: logical FALSE 24 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
outside_area_gestation_stable
Summary statistics:
Variable: outside_area_gestation_stable Class: logical FALSE 21 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.84, TRUE 0.16 NA count: 0
outside_area_farrowing_stable
Summary statistics:
Variable: outside_area_farrowing_stable Class: logical FALSE 24 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
outside_area_weaner_stable
Summary statistics:
Variable: outside_area_weaner_stable Class: logical FALSE 23 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
outside_area_fattening_stable
Summary statistics:
Variable: outside_area_fattening_stable Class: logical FALSE 10 TRUE 15 Mode: TRUE Proportion of levels: FALSE 0.40, TRUE 0.60 NA count: 0
outside_area_contact_poultry
Summary statistics:
Variable: outside_area_contact_poultry Class: logical FALSE 24 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
outside_area_contact_wild_birds
Summary statistics:
Variable: outside_area_contact_wild_birds Class: logical FALSE 10 TRUE 15 Mode: TRUE Proportion of levels: FALSE 0.40, TRUE 0.60 NA count: 0
outside_area_contact_wild_boars
Summary statistics:
Variable: outside_area_contact_wild_boars Class: logical FALSE 14 TRUE 11 Mode: FALSE Proportion of levels: FALSE 0.56, TRUE 0.44 NA count: 0
contact_bird_in_stable
Summary statistics:
Variable: contact_bird_in_stable Class: logical FALSE 15 TRUE 10 Mode: FALSE Proportion of levels: FALSE 0.60, TRUE 0.40 NA count: 0
cleaning_ai_centre
Summary statistics:
Variable: cleaning_ai_centre Class: logical FALSE 5 Mode: FALSE Proportion of levels: FALSE 1.00 NA count: 20
cleaning_gestation_stable
Summary statistics:
Variable: cleaning_gestation_stable Class: logical FALSE 2 TRUE 3 Mode: TRUE Proportion of levels: FALSE 0.40, TRUE 0.60 NA count: 20
cleaning_farrowing_stable
Summary statistics:
Variable: cleaning_farrowing_stable Class: logical FALSE 1 TRUE 8 Mode: TRUE Proportion of levels: FALSE 0.11, TRUE 0.89 NA count: 16
cleaning_weaner_stable
Summary statistics:
Variable: cleaning_weaner_stable Class: logical FALSE 2 TRUE 8 Mode: TRUE Proportion of levels: FALSE 0.20, TRUE 0.80 NA count: 15
cleaning_fattening_stable
Summary statistics:
Variable: cleaning_fattening_stable Class: factor 1 4 2 10 3 8 NA's 3 Mode: 2 Proportion of levels: 1 0.18, 2 0.45, 3 0.36 Levels: 1, 2, 3 NA count: 3
cleaning_quarantine
Summary statistics:
Variable: cleaning_quarantine Class: logical FALSE 3 Mode: FALSE Proportion of levels: FALSE 1.00 NA count: 22
disinfection_ai_centre
Summary statistics:
Variable: disinfection_ai_centre Class: logical FALSE 5 Mode: FALSE Proportion of levels: FALSE 1.00 NA count: 20
disinfection_farrowing_stable
Summary statistics:
Variable: disinfection_farrowing_stable Class: logical TRUE 9 Mode: TRUE Proportion of levels: TRUE 1.00 NA count: 16
disinfection_weaner_stable
Summary statistics:
Variable: disinfection_weaner_stable Class: logical TRUE 10 Mode: TRUE Proportion of levels: TRUE 1.00 NA count: 15
disinfection_fattening_stable
Summary statistics:
Variable: disinfection_fattening_stable Class: logical FALSE 20 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.91, TRUE 0.09 NA count: 3
drying_ai_centre
Summary statistics:
Variable: drying_ai_centre Class: logical TRUE 5 Mode: TRUE Proportion of levels: TRUE 1.00 NA count: 20
drying_gestation_stable
Summary statistics:
Variable: drying_gestation_stable Class: logical FALSE 3 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.60, TRUE 0.40 NA count: 20
drying_farrowing_stable
Summary statistics:
Variable: drying_farrowing_stable Class: logical FALSE 2 TRUE 7 Mode: TRUE Proportion of levels: FALSE 0.22, TRUE 0.78 NA count: 16
drying_weaner_stable
Summary statistics:
Variable: drying_weaner_stable Class: logical FALSE 2 TRUE 8 Mode: TRUE Proportion of levels: FALSE 0.20, TRUE 0.80 NA count: 15
drying_fattening_stable
Summary statistics:
Variable: drying_fattening_stable Class: factor 1 6 2 6 3 10 NA's 3 Mode: 3 Proportion of levels: 1 0.27, 2 0.27, 3 0.45 Levels: 1, 2, 3 NA count: 3
drying_quarantine
Summary statistics:
Variable: drying_quarantine Class: logical FALSE 2 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.67, TRUE 0.33 NA count: 22
cleaning_disinfection_transport_vehicle
Summary statistics:
Variable: cleaning_disinfection_transport_vehicle Class: logical FALSE 2 TRUE 20 Mode: TRUE Proportion of levels: FALSE 0.09, TRUE 0.91 NA count: 3
cleaning_shipment_area
Summary statistics:
Variable: cleaning_shipment_area Class: logical FALSE 15 TRUE 9 Mode: FALSE Proportion of levels: FALSE 0.62, TRUE 0.38 NA count: 1
caretaker_number
Summary statistics:
Variable: caretaker_number Class: integer Min. 1.00 1st Qu. 2.00 Median 2.00 Mean 2.16 3rd Qu. 3.00 Max. 3.00 Variance: 0.4733 Shapiro-Wilk p-value: 0.0002267 (not normal) NA count: 0
caretaker_ppe_stable
Summary statistics:
Variable: caretaker_ppe_stable Class: logical FALSE 9 TRUE 16 Mode: TRUE Proportion of levels: FALSE 0.36, TRUE 0.64 NA count: 0
caretaker_ppe_washing_interval
Summary statistics:
Variable: caretaker_ppe_washing_interval Class: logical FALSE 2 TRUE 22 Mode: TRUE Proportion of levels: FALSE 0.08, TRUE 0.92 NA count: 1
caretaker_ppe_per_unit
Summary statistics:
Variable: caretaker_ppe_per_unit Class: logical FALSE 23 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
caretaker_per_unit
Summary statistics:
Variable: caretaker_per_unit Class: logical FALSE 25 Mode: FALSE Proportion of levels: FALSE 1.00 NA count: 0
caretaker_work_flow_hygiene_between_units
Summary statistics:
Variable: caretaker_work_flow_hygiene_between_units Class: logical FALSE 17 TRUE 8 Mode: FALSE Proportion of levels: FALSE 0.68, TRUE 0.32 NA count: 0
caretaker_entry_ppe_only
Summary statistics:
Variable: caretaker_entry_ppe_only Class: logical FALSE 13 TRUE 12 Mode: FALSE Proportion of levels: FALSE 0.52, TRUE 0.48 NA count: 0
caretaker_disease_management
Summary statistics:
Variable: caretaker_disease_management Class: logical FALSE 20 TRUE 5 Mode: FALSE Proportion of levels: FALSE 0.80, TRUE 0.20 NA count: 0
caretaker_hands_washed_before_entry
Summary statistics:
Variable: caretaker_hands_washed_before_entry Class: logical FALSE 12 TRUE 13 Mode: TRUE Proportion of levels: FALSE 0.48, TRUE 0.52 NA count: 0
caretaker_boot_disinfection
Summary statistics:
Variable: caretaker_boot_disinfection Class: logical FALSE 21 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.84, TRUE 0.16 NA count: 0
caretaker_contact_other_pigs
Summary statistics:
Variable: caretaker_contact_other_pigs Class: logical FALSE 18 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.82, TRUE 0.18 NA count: 3
caretaker_contact_poultry
Summary statistics:
Variable: caretaker_contact_poultry Class: logical FALSE 15 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 8
visitors_cumulative_contact_hours
Summary statistics:
Variable: visitors_cumulative_contact_hours Class: numeric Min. 1.00 1st Qu. 2.00 Median 3.00 Mean 3.96 3rd Qu. 5.00 Max. 10.00 Variance: 6.873 Shapiro-Wilk p-value: 0.004644 (not normal) NA count: 0
visitors_list
Summary statistics:
Variable: visitors_list Class: logical FALSE 3 TRUE 22 Mode: TRUE Proportion of levels: FALSE 0.12, TRUE 0.88 NA count: 0
ppe_visitors
Summary statistics:
Variable: ppe_visitors Class: logical FALSE 2 TRUE 23 Mode: TRUE Proportion of levels: FALSE 0.08, TRUE 0.92 NA count: 0
visitors_hands_washed_before_entry
Summary statistics:
Variable: visitors_hands_washed_before_entry Class: logical FALSE 18 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.72, TRUE 0.28 NA count: 0
visitors_disease_management
Summary statistics:
Variable: visitors_disease_management Class: logical FALSE 7 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 17
visitors_contact_other_pigs
Summary statistics:
Variable: visitors_contact_other_pigs Class: logical FALSE 5 TRUE 12 Mode: TRUE Proportion of levels: FALSE 0.29, TRUE 0.71 NA count: 8
return_to_service_rate
Summary statistics:
Variable: return_to_service_rate Class: logical TRUE 3 Mode: TRUE Proportion of levels: TRUE 1.00 NA count: 22
farrowing_rate
Summary statistics:
Variable: farrowing_rate Class: logical FALSE 2 TRUE 3 Mode: TRUE Proportion of levels: FALSE 0.40, TRUE 0.60 NA count: 20
piglets_per_sow_year
Summary statistics:
Variable: piglets_per_sow_year Class: logical FALSE 2 TRUE 4 Mode: TRUE Proportion of levels: FALSE 0.33, TRUE 0.67 NA count: 19
abortions_per_sow_year
Summary statistics:
Variable: abortions_per_sow_year Class: logical TRUE 6 Mode: TRUE Proportion of levels: TRUE 1.00 NA count: 19
piglet_mortality
Summary statistics:
Variable: piglet_mortality Class: logical FALSE 3 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.50, TRUE 0.50 NA count: 19
feed_conversion_rate_fattening_pigs
Summary statistics:
Variable: feed_conversion_rate_fattening_pigs Class: logical FALSE 1 TRUE 8 Mode: TRUE Proportion of levels: FALSE 0.11, TRUE 0.89 NA count: 16
respiratory_history_swine
Summary statistics:
Variable: respiratory_history_swine Class: factor 1 3 2 4 3 14 NA's 4 Mode: 3 Proportion of levels: 1 0.14, 2 0.19, 3 0.67 Levels: 1, 2, 3 NA count: 4
time_respiratory_disease
Summary statistics:
Variable: time_respiratory_disease Class: logical FALSE 2 TRUE 10 Mode: TRUE Proportion of levels: FALSE 0.17, TRUE 0.83 NA count: 13
frequency_respi_outbreak
Summary statistics:
Variable: frequency_respi_outbreak Class: factor rarely or never 15 seasonal 6 regular 4 Mode: rarely or never Proportion of levels: rarely or never 0.60, seasonal 0.24, regular 0.16 Levels: rarely or never, seasonal, regular NA count: 0
start_time_current_outbreak
Summary statistics:
Variable: start_time_current_outbreak Class: integer Min. 2.000 1st Qu. 4.250 Median 6.000 Mean 7.909 3rd Qu. 7.000 Max. 30.000 NA's 3 Variance: 47.42 Shapiro-Wilk p-value: 0.000002879 (not normal) NA count: 3
outbreak_since_examination
Summary statistics:
Variable: outbreak_since_examination Class: logical FALSE 19 TRUE 6 Mode: FALSE Proportion of levels: FALSE 0.76, TRUE 0.24 NA count: 0
suckling_piglets_diseased
Summary statistics:
Variable: suckling_piglets_diseased Class: logical FALSE 23 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
weaners_diseased
Summary statistics:
Variable: weaners_diseased Class: logical FALSE 16 TRUE 9 Mode: FALSE Proportion of levels: FALSE 0.64, TRUE 0.36 NA count: 0
fattening_pigs_diseased
Summary statistics:
Variable: fattening_pigs_diseased Class: logical FALSE 7 TRUE 18 Mode: TRUE Proportion of levels: FALSE 0.28, TRUE 0.72 NA count: 0
old_sows_diseased
Summary statistics:
Variable: old_sows_diseased Class: logical FALSE 23 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
symptom_swine_sneezing
Summary statistics:
Variable: symptom_swine_sneezing Class: logical FALSE 14 TRUE 11 Mode: FALSE Proportion of levels: FALSE 0.56, TRUE 0.44 NA count: 0
symptom_swine_coughing
Summary statistics:
Variable: symptom_swine_coughing Class: logical TRUE 25 Mode: TRUE Proportion of levels: TRUE 1.00 NA count: 0
symptom_swine_nasal_discharge
Summary statistics:
Variable: symptom_swine_nasal_discharge Class: logical FALSE 18 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.72, TRUE 0.28 NA count: 0
symptom_swine_fever
Summary statistics:
Variable: symptom_swine_fever Class: logical FALSE 13 TRUE 12 Mode: FALSE Proportion of levels: FALSE 0.52, TRUE 0.48 NA count: 0
symptom_swine_feed_intake_red
Summary statistics:
Variable: symptom_swine_feed_intake_red Class: logical FALSE 11 TRUE 14 Mode: TRUE Proportion of levels: FALSE 0.44, TRUE 0.56 NA count: 0
symptom_swine_apathy
Summary statistics:
Variable: symptom_swine_apathy Class: logical FALSE 15 TRUE 10 Mode: FALSE Proportion of levels: FALSE 0.60, TRUE 0.40 NA count: 0
symptom_swine_dyspnoea
Summary statistics:
Variable: symptom_swine_dyspnoea Class: logical FALSE 17 TRUE 8 Mode: FALSE Proportion of levels: FALSE 0.68, TRUE 0.32 NA count: 0
vet_consultation
Summary statistics:
Variable: vet_consultation Class: logical FALSE 8 TRUE 17 Mode: TRUE Proportion of levels: FALSE 0.32, TRUE 0.68 NA count: 0
influenza_diagnosis
Summary statistics:
Variable: influenza_diagnosis Class: logical FALSE 25 Mode: FALSE Proportion of levels: FALSE 1.00 NA count: 0
influenza_vaccination
Summary statistics:
Variable: influenza_vaccination Class: logical FALSE 23 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
respiratory_history_human
Summary statistics:
Variable: respiratory_history_human Class: logical FALSE 18 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.72, TRUE 0.28 NA count: 0
respiratory_history_contact_person
Summary statistics:
Variable: respiratory_history_contact_person Class: logical FALSE 18 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.72, TRUE 0.28 NA count: 0
starting_point_current_disease
Summary statistics:
Variable: starting_point_current_disease Class: integer Min. 3.00 1st Qu. 7.00 Median 10.00 Mean 10.11 3rd Qu. 14.00 Max. 21.00 NA's 16 Variance: 33.11 Shapiro-Wilk p-value: 0.6537 (normal) NA count: 16
symptom_human_sneezing
Summary statistics:
Variable: symptom_human_sneezing Class: logical FALSE 17 TRUE 8 Mode: FALSE Proportion of levels: FALSE 0.68, TRUE 0.32 NA count: 0
symptom_human_coughing
Summary statistics:
Variable: symptom_human_coughing Class: logical FALSE 16 TRUE 9 Mode: FALSE Proportion of levels: FALSE 0.64, TRUE 0.36 NA count: 0
symptom_human_bronchitis
Summary statistics:
Variable: symptom_human_bronchitis Class: logical FALSE 24 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
symptom_human_pneumonia
Summary statistics:
Variable: symptom_human_pneumonia Class: logical FALSE 24 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
symptom_human_fever
Summary statistics:
Variable: symptom_human_fever Class: logical FALSE 21 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.84, TRUE 0.16 NA count: 0
symptom_human_headache
Summary statistics:
Variable: symptom_human_headache Class: logical FALSE 22 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 0
symptom_human_myalgia
Summary statistics:
Variable: symptom_human_myalgia Class: logical FALSE 23 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
symptom_severity
Summary statistics:
Variable: symptom_severity Class: logical FALSE 7 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.70, TRUE 0.30 NA count: 15
physician_consultation
Summary statistics:
Variable: physician_consultation Class: logical FALSE 24 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.96, TRUE 0.04 NA count: 0
flu_vaccination_contacts
Summary statistics:
Variable: flu_vaccination_contacts Class: logical FALSE 23 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
chronic_disease_condition
Summary statistics:
Variable: chronic_disease_condition Class: logical FALSE 22 TRUE 3 Mode: FALSE Proportion of levels: FALSE 0.88, TRUE 0.12 NA count: 0
smoker
Summary statistics:
Variable: smoker Class: logical FALSE 18 TRUE 7 Mode: FALSE Proportion of levels: FALSE 0.72, TRUE 0.28 NA count: 0
Age_weeks_factor
Summary statistics:
Variable: Age_weeks_factor Class: factor suckling_piglets (1–8w) 2 weaners (4–10w) 7 fatteners (11–14w) 10 fatteners (15–18w) 3 fatteners (≥19w) 3 Mode: fatteners (11–14w) Proportion of levels: suckling_piglets (1–8w) 0.08, weaners (4–10w) 0.28, fatteners (11–14w) 0.40, fatteners (15–18w) 0.12, fatteners (≥19w) 0.12 Levels: suckling_piglets (1–8w), weaners (4–10w), fatteners (11–14w), fatteners (15–18w), fatteners (≥19w) NA count: 0
separation_quarantine_area
Summary statistics:
Variable: separation_quarantine_area Class: factor 1 2 2 1 3 20 NA's 2 Mode: 3 Proportion of levels: 1 0.09, 2 0.04, 3 0.87 Levels: 1, 2, 3 NA count: 2
bird_nests
Summary statistics:
Variable: bird_nests Class: logical FALSE 20 TRUE 5 Mode: FALSE Proportion of levels: FALSE 0.80, TRUE 0.20 NA count: 0
farrowing_piglets_reduced_general_wellbeing
Summary statistics:
Variable: farrowing_piglets_reduced_general_wellbeing Class: logical FALSE 8 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.89, TRUE 0.11 NA count: 16
farrowing_piglets_sneezing
Summary statistics:
Variable: farrowing_piglets_sneezing Class: numeric Min. 0.000 1st Qu. 0.000 Median 0.000 Mean 8.667 3rd Qu. 10.000 Max. 33.000 NA's 16 Variance: 179.8 Shapiro-Wilk p-value: 0.001238 (not normal) NA count: 16
farrowing_piglets_coughing
Summary statistics:
Variable: farrowing_piglets_coughing Class: numeric Min. 0.000 1st Qu. 0.000 Median 1.000 Mean 9.222 3rd Qu. 5.000 Max. 42.000 NA's 16 Variance: 264.7 Shapiro-Wilk p-value: 0.0002322 (not normal) NA count: 16
farrowing_room_temperature
Summary statistics:
Variable: farrowing_room_temperature Class: numeric Min. 4.00 1st Qu. 15.47 Median 16.90 Mean 15.05 3rd Qu. 18.32 Max. 18.70 NA's 19 Variance: 31.17 Shapiro-Wilk p-value: 0.007602 (not normal) NA count: 19
farrowing_nest_temperature_ok
Summary statistics:
Variable: farrowing_nest_temperature_ok Class: logical FALSE 1 TRUE 7 Mode: TRUE Proportion of levels: FALSE 0.12, TRUE 0.88 NA count: 17
farrowing_airflow
Summary statistics:
Variable: farrowing_airflow Class: numeric Min. 0.0500 1st Qu. 0.1050 Median 0.1500 Mean 0.1417 3rd Qu. 0.1950 Max. 0.2000 NA's 19 Variance: 0.003777 Shapiro-Wilk p-value: 0.3309 (normal) NA count: 19
farrowing_air_quality
Summary statistics:
Variable: farrowing_air_quality Class: factor 1 1 2 6 3 2 NA's 16 Mode: 2 Proportion of levels: 1 0.11, 2 0.67, 3 0.22 Levels: 1, 2, 3 NA count: 16
farrowing_airspace_with_other_agegroup
Summary statistics:
Variable: farrowing_airspace_with_other_agegroup Class: factor 1 3 2 2 3 4 NA's 16 Mode: 3 Proportion of levels: 1 0.33, 2 0.22, 3 0.44 Levels: 1, 2, 3 NA count: 16
ai_sows_room_temperature
Summary statistics:
Variable: ai_sows_room_temperature Class: numeric Min. 11.00 1st Qu. 12.75 Median 14.50 Mean 14.50 3rd Qu. 16.25 Max. 18.00 NA's 23 Variance: 24.5 Shapiro-Wilk test not applicable (n<3 or n>5000) NA count: 23
ai_sows_airflow
Summary statistics:
Variable: ai_sows_airflow Class: numeric Min. 0.10 1st Qu. 0.12 Median 0.14 Mean 0.14 3rd Qu. 0.16 Max. 0.18 NA's 23 Variance: 0.0032 Shapiro-Wilk test not applicable (n<3 or n>5000) NA count: 23
ai_sows_air_quality
Summary statistics:
Variable: ai_sows_air_quality Class: factor 2 4 NA's 21 Mode: 2 Proportion of levels: 2 1.00 Levels: 2 NA count: 21
ai_airspace_with_other_agegroup
Summary statistics:
Variable: ai_airspace_with_other_agegroup Class: logical TRUE 1 Mode: TRUE Proportion of levels: TRUE 1.00 NA count: 24
gestation_sows_qm_per_animal
Summary statistics:
Variable: gestation_sows_qm_per_animal Class: numeric Min. 2.50 1st Qu. 2.50 Median 2.85 Mean 3.53 3rd Qu. 3.64 Max. 6.16 NA's 20 Variance: 2.378 Shapiro-Wilk p-value: 0.04576 (not normal) NA count: 20
gestation_sows_animals_per_water_source
Summary statistics:
Variable: gestation_sows_animals_per_water_source Class: numeric Min. 2 1st Qu. 4 Median 10 Mean 8 3rd Qu. 12 Max. 12 NA's 20 Variance: 22 Shapiro-Wilk p-value: 0.1542 (normal) NA count: 20
gestation_sows_room_temperature
Summary statistics:
Variable: gestation_sows_room_temperature Class: numeric Min. 7.50 1st Qu. 9.25 Median 11.00 Mean 12.83 3rd Qu. 15.50 Max. 20.00 NA's 22 Variance: 41.58 Shapiro-Wilk p-value: 0.5249 (normal) NA count: 22
gestation_sows_airflow
Summary statistics:
Variable: gestation_sows_airflow Class: numeric Min. 0.050 1st Qu. 0.075 Median 0.100 Mean 0.100 3rd Qu. 0.125 Max. 0.150 NA's 22 Variance: 0.0025 Shapiro-Wilk p-value: 1 (normal) NA count: 22
gestation_sows_air_quality
Summary statistics:
Variable: gestation_sows_air_quality Class: factor 1 1 2 3 3 1 NA's 20 Mode: 2 Proportion of levels: 1 0.20, 2 0.60, 3 0.20 Levels: 1, 2, 3 NA count: 20
gestation_sows_airspace_with_other_agegroup
Summary statistics:
Variable: gestation_sows_airspace_with_other_agegroup Class: factor 1 2 2 1 3 2 NA's 20 Mode: 1 Proportion of levels: 1 0.40, 2 0.20, 3 0.40 Levels: 1, 2, 3 NA count: 20
weaners_reduced_general_wellbeing
Summary statistics:
Variable: weaners_reduced_general_wellbeing Class: logical FALSE 8 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.80, TRUE 0.20 NA count: 15
weaners_sneezing
Summary statistics:
Variable: weaners_sneezing Class: numeric Min. 0.000 1st Qu. 2.825 Median 5.900 Mean 12.450 3rd Qu. 12.950 Max. 45.800 NA's 19 Variance: 293.2 Shapiro-Wilk p-value: 0.02109 (not normal) NA count: 19
weaners_coughing
Summary statistics:
Variable: weaners_coughing Class: numeric Min. 0.000 1st Qu. 3.175 Median 5.050 Mean 5.233 3rd Qu. 7.450 Max. 10.500 NA's 19 Variance: 13.98 Shapiro-Wilk p-value: 0.9987 (normal) NA count: 19
weaners_discharge
Summary statistics:
Variable: weaners_discharge Class: logical FALSE 9 TRUE 1 Mode: FALSE Proportion of levels: FALSE 0.90, TRUE 0.10 NA count: 15
weaners_qm_per_animal
Summary statistics:
Variable: weaners_qm_per_animal Class: numeric Min. 0.2000 1st Qu. 0.3050 Median 0.3550 Mean 0.5090 3rd Qu. 0.4675 Max. 1.9500 NA's 15 Variance: 0.2683 Shapiro-Wilk p-value: 0.00001973 (not normal) NA count: 15
weaners_animals_per_feeding_site_factor
Summary statistics:
Variable: weaners_animals_per_feeding_site_factor Class: factor <20 1 <30 1 <40 4 >40 3 trough 1 NA's 15 Mode: <40 Proportion of levels: <20 0.10, <30 0.10, <40 0.40, >40 0.30, trough 0.10 Levels: <20, <30, <40, >40, trough NA count: 15
weaners_animals_per_water_source
Summary statistics:
Variable: weaners_animals_per_water_source Class: numeric Min. 6.000 1st Qu. 9.812 Median 11.000 Mean 13.675 3rd Qu. 14.250 Max. 30.000 NA's 15 Variance: 57.11 Shapiro-Wilk p-value: 0.02286 (not normal) NA count: 15
weaners_room_temperature
Summary statistics:
Variable: weaners_room_temperature Class: numeric Min. 7.50 1st Qu. 14.60 Median 17.80 Mean 16.74 3rd Qu. 20.45 Max. 21.80 NA's 18 Variance: 27.24 Shapiro-Wilk p-value: 0.2674 (normal) NA count: 18
weaners_airflow
Summary statistics:
Variable: weaners_airflow Class: numeric Min. 0.05000 1st Qu. 0.07500 Median 0.10000 Mean 0.09857 3rd Qu. 0.10500 Max. 0.18000 NA's 18 Variance: 0.001914 Shapiro-Wilk p-value: 0.1408 (normal) NA count: 18
weaners_air_quality
Summary statistics:
Variable: weaners_air_quality Class: logical FALSE 6 TRUE 4 Mode: FALSE Proportion of levels: FALSE 0.60, TRUE 0.40 NA count: 15
weaners_airspace_with_other_agegroup
Summary statistics:
Variable: weaners_airspace_with_other_agegroup Class: factor 2 4 3 2 4 4 NA's 15 Mode: 2 Proportion of levels: 2 0.40, 3 0.20, 4 0.40 Levels: 2, 3, 4 NA count: 15
fattening_pigs_reduced_general_wellbeing
Summary statistics:
Variable: fattening_pigs_reduced_general_wellbeing Class: logical FALSE 9 TRUE 11 Mode: TRUE Proportion of levels: FALSE 0.45, TRUE 0.55 NA count: 5
fattening_pigs_sneezing
Summary statistics:
Variable: fattening_pigs_sneezing Class: numeric Min. 0.000 1st Qu. 0.600 Median 1.750 Mean 2.331 3rd Qu. 2.825 Max. 10.000 NA's 9 Variance: 6.816 Shapiro-Wilk p-value: 0.003066 (not normal) NA count: 9
fattening_pigs_coughing
Summary statistics:
Variable: fattening_pigs_coughing Class: numeric Min. 0.000 1st Qu. 2.795 Median 5.000 Mean 4.916 3rd Qu. 7.050 Max. 9.400 NA's 9 Variance: 8.074 Shapiro-Wilk p-value: 0.7839 (normal) NA count: 9
fattening_pigs_qm_per_animal
Summary statistics:
Variable: fattening_pigs_qm_per_animal Class: numeric Min. 0.460 1st Qu. 0.710 Median 0.800 Mean 1.071 3rd Qu. 1.330 Max. 2.500 NA's 8 Variance: 0.3185 Shapiro-Wilk p-value: 0.01743 (not normal) NA count: 8
fattening_pigs_feeding_site_per_animal_factor
Summary statistics:
Variable: fattening_pigs_feeding_site_per_animal_factor Class: factor under 25 Animals/feeder 4 over 25 Animals/feeder 4 under 25cm trough/animal 1 over 25cm trough/animal 7 Other 4 NA 5 Mode: over 25cm trough/animal Proportion of levels: under 25 Animals/feeder 0.16, over 25 Animals/feeder 0.16, under 25cm trough/animal 0.04, over 25cm trough/animal 0.28, Other 0.16, NA 0.20 Levels: under 25 Animals/feeder, over 25 Animals/feeder, under 25cm trough/animal, over 25cm trough/animal, Other, NA NA count: 0
fattening_pigs_animals_per_water_source
Summary statistics:
Variable: fattening_pigs_animals_per_water_source Class: numeric Min. 5.00 1st Qu. 10.47 Median 12.75 Mean 13.49 3rd Qu. 16.52 Max. 22.50 NA's 7 Variance: 23.47 Shapiro-Wilk p-value: 0.9432 (normal) NA count: 7
fattening_pigs_room_temperature
Summary statistics:
Variable: fattening_pigs_room_temperature Class: numeric Min. 13.20 1st Qu. 16.80 Median 17.80 Mean 18.35 3rd Qu. 19.70 Max. 23.90 NA's 10 Variance: 8.691 Shapiro-Wilk p-value: 0.9263 (normal) NA count: 10
fattening_pigs_airflow
Summary statistics:
Variable: fattening_pigs_airflow Class: numeric Min. 0.0700 1st Qu. 0.1000 Median 0.2000 Mean 0.2231 3rd Qu. 0.3000 Max. 0.5000 NA's 12 Variance: 0.02049 Shapiro-Wilk p-value: 0.03297 (not normal) NA count: 12
fattening_pigs_air_quality
Summary statistics:
Variable: fattening_pigs_air_quality Class: factor 1 2 2 12 3 6 NA's 5 Mode: 2 Proportion of levels: 1 0.10, 2 0.60, 3 0.30 Levels: 1, 2, 3 NA count: 5
fattening_pigs_airspace_with_other_agegroup
Summary statistics:
Variable: fattening_pigs_airspace_with_other_agegroup Class: factor 1 15 2 2 3 1 4 2 NA's 5 Mode: 1 Proportion of levels: 1 0.75, 2 0.10, 3 0.05, 4 0.10 Levels: 1, 2, 3, 4 NA count: 5
report_killed_weaners
Summary statistics:
Variable: report_killed_weaners Class: logical FALSE 23 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
report_killed_fattening_pigs
Summary statistics:
Variable: report_killed_fattening_pigs Class: logical FALSE 23 TRUE 2 Mode: FALSE Proportion of levels: FALSE 0.92, TRUE 0.08 NA count: 0
Exposures
Session Information
## Generated by: jonasalexandersteiner## Generated on: 2025-07-11 18:00:19## Locale: LC_COLLATE=en_US.UTF-8;LC_CTYPE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8## Dataset dimensions: 25 rows x 178 columns## [1] "binom" "patchwork" "ggbeeswarm" "gridExtra" "GGally" "skimr" "openxlsx" "deeplr" "kableExtra" "knitr" "broom" "DT" "janitor" "writexl"
## [15] "readxl" "haven" "lubridate" "forcats" "stringr" "purrr" "readr" "tidyr" "tibble" "tidyverse" "scales" "ggplot2" "dplyr" "pacman"